Orthoweb REST API

It is the database entry point. Below one can find the links for direct data access. Response will be as JSON file.

Organisms data requests:

• /organisms/ - organisms list.
• /organisms/{identifier} - organism data.
• /organisms/{identifier}/genes - genes of the organism.
• /organisms/{identifier}/pai - genes PAI data for organism.
• /organisms/{identifier}/di - genes DI data for organism.
• /organisms/{identifier}/ko - genes ko_pai data for organism.
• /organisms/{identifier}/go - genes go data for organism.
• /organisms/{identifier}/snp - genes SNP data for organism.

Genes data requests:

• /genes/ - genes list.
• /genes/{identifier} - {identifier} gene information.

PAI data requests:

• /pai/ - available PAI data.
• /pai/{identifier} - {identifier} PAI entry information.
• /pai/organism/{identifier} - list of all PAI entries for the organism {identifier}.
• /pai/organism/{identifier}/identity/{identity} - list of all PAI entries for the organism {identifier} with identity={identity}.
• /pai/organism/{identifier}/identity/{identity}/swscore/{swscore} - list of all PAI entries for the organism {identifier} with identity={identity} and swscore={swscore}.

DI data requests:

• /api-db/di/organism/{identifier} - available SNP data for the organism {identifier}.
• /api-db/di/{identifier} - {identifier} SNP entry data.

Kegg orthology PAI data requests:

• /api-db/ko_pai/organism/{identifier} - available KO PAI data for the organism {identifier}.
• /api-db/ko_pai/{identifier} - {identifier} KO PAI entry data.

Gene Ontology data requests:

• /api-db/go/organism/{identifier} - available GO data for the organism {identifier}.
• /api-db/go/{identifier} - {identifier} GO entry data.

SNP data requests:

• /api-db/snp/organism/{identifier} - available SNP data for the organism {identifier}.
• /api-db/snp/{identifier} - {identifier} SNP entry data.

For questions related to data access problems, write to the address "MustafinZS [@] bionet [.] nsc [.] ru" or "kazfdr [@] bionet [.] nsc [.] ru" .